A pure web implementations of MapMan over represention analysis and MapMan visualization

MapMan JS

This is a new implementation of MapMan partially translating the original Java sources xml parsing is rudimentary at the moment and might be in the future become obsolete a portable rewrite of MapMan in Javascript micromapman

Over Representation Analysis

Starting with enrichment analysis for categories. This relies on a D3 v3 at the moment. Genes are counted in both your selection as well as in the reference and then for each Bin a Fisher's exact test for an over(under)representation is run. All p-values are globally corrected using a Benjamini Hochberg type procedure. Statistics is a partial backport of a Java port from the GSL.


add other charting capabilities make table more flexible port to D3 v5 add hierarchical p-value


v 0.11 first public version v 0.12 June 2018 added first public MapMan web version v 0.13 March 2019 ORA behaviour improved for autogenerated files


please cite Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B. MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis. Mol Plant. 2019 Jan 8. pii: S1674-2052(19)30008-5. doi: 10.1016/j.molp.2019.01.003. Funding This work was funded in part by the project IdeResModBar by the German Ministry of Education and Research and the EU Horizon2020 project GoodBerry