A pure web implementations of MapMan over represention analysis and MapMan visualization
This is a new implementation of MapMan partially translating the original Java sources
xml parsing is rudimentary at the moment and might be in the future become obsolete
Over Representation Analysis
Starting with enrichment analysis for categories. This relies on a D3 v3 at the moment. Genes are counted in both your selection as well as in the reference and then for each Bin a Fisher's exact test for an over(under)representation is run. All p-values are globally corrected using a Benjamini Hochberg type procedure.
Statistics is a partial backport of a Java port from the GSL.
add other charting capabilities make table more flexible port to D3 v5 add hierarchical p-value
v 0.11 first public version
v 0.12 June 2018 added first public MapMan web version
v 0.13 March 2019 ORA behaviour improved for autogenerated files
Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B. MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis. Mol Plant. 2019 Jan 8. pii: S1674-2052(19)30008-5. doi: 10.1016/j.molp.2019.01.003.
This work was funded in part by the project IdeResModBar by the German Ministry of Education and Research and the EU Horizon2020 project GoodBerry